PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0221649.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 149aa MW: 16774.1 Da PI: 4.8067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.8 | 4.3e-12 | 12 | 56 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia+ ++ g+tl+++k+++ Lj0g3v0221649.2 12 EWSREQDKAFENALATYPEDdsdRWEKIAADVP-GKTLEEIKHHYE 56 7********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 26.2 | 1.8e-08 | 123 | 149 | 3 | 29 |
SS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIar 29 +WT+eE+ l++ + ++G+g+W++I+r Lj0g3v0221649.2 123 AWTEEEHRLFLLGLDKYGKGDWRSISR 149 6************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.704 | 8 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-10 | 9 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.59E-12 | 11 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-9 | 12 | 59 | No hit | No description |
Pfam | PF00249 | 1.7E-9 | 12 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-6 | 12 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.693 | 115 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.17E-6 | 118 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-6 | 123 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.26E-6 | 123 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 123 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTVDEVGSSS SEWSREQDKA FENALATYPE DDSDRWEKIA ADVPGKTLEE IKHHYELLVD 60 DVNQIDSGCV PVPSYNSFSE GSRSHASDEG AGKKGGHPWN YNSESNHGTK ASRSDQERRK 120 GIAWTEEEHR LFLLGLDKYG KGDWRSISR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 9 | 77 | 7 | 75 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1022 | 0.0 | pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0221649.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146241 | 0.0 | BT146241.1 Lotus japonicus clone JCVI-FLLj-3K12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532025.1 | 4e-92 | transcription factor SRM1 | ||||
Refseq | XP_006585964.1 | 4e-92 | transcription factor SRM1 | ||||
Refseq | XP_025985536.1 | 4e-92 | transcription factor SRM1 | ||||
Refseq | XP_025985537.1 | 4e-92 | transcription factor SRM1 | ||||
Refseq | XP_028245644.1 | 4e-92 | transcription factor SRM1-like | ||||
Refseq | XP_028245645.1 | 4e-92 | transcription factor SRM1-like | ||||
Refseq | XP_028245646.1 | 4e-92 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 5e-61 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A445JLL2 | 9e-91 | A0A445JLL2_GLYSO; Transcription factor SRM1 isoform A | ||||
TrEMBL | K7L9L3 | 9e-91 | K7L9L3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G40020.5 | 1e-91 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-63 | MYB family protein |
Publications ? help Back to Top | |||
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