PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0211739.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 817aa    MW: 92583.9 Da    PI: 8.6075
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0211739.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.92.5e-162175357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     kR   +++qle Le+ ++ + yp +  r+eL++klgL++rq ++WF+ rR k++k
  Lj0g3v0211739.1 21 KRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGLSDRQLQMWFCHRRLKDRK 75
                     89999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-16475IPR009057Homeodomain-like
SuperFamilySSF466892.87E-141475IPR009057Homeodomain-like
PROSITE profilePS5007115.9691676IPR001356Homeobox domain
SMARTSM003891.9E-141880IPR001356Homeobox domain
CDDcd000862.86E-111975No hitNo description
PfamPF000467.5E-142175IPR001356Homeobox domain
PROSITE profilePS5082716.662551610IPR018501DDT domain
SMARTSM005711.1E-21551610IPR018501DDT domain
PfamPF027913.4E-18552607IPR018501DDT domain
PfamPF050667.8E-15733800IPR007759HB1/Asxl, restriction endonuclease HTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MECGSEEENK KNTPEGENKV KRKMKSASQL ELLEKTYAVE AYPGEVLRAE LSEKLGLSDR  60
QLQMWFCHRR LKDRKATPGS NKLLNDSPPT SGPVGERAEQ VAKADVKHDG GVASELRPFG  120
HPDSWRVVPQ PGIMAFPIMG AAGLPAMESS SYNEPHQTRE ELRAIAFMER QLGEPLREDG  180
PILGMEFDSL PPGAFGAPIG AVTMGQHRQS GRTLEAKTYE QLDKGVSSRT LHEYQFIPEQ  240
PTVKIEKYER VSPSIHFSSP DGIPHRRTLL PSGRSCLNGN ESAPYGYGVQ GQIPRLNLLS  300
EQGRQNHLFP SASGGNDVLQ KNPFIDATFE THNGAHPITL IDSPLMPSNR RVIHEEELSR  360
FQRKRKIEEA RMQRELEAQE KRIRKELEKQ DILRQKREEQ IKKEMERHNR ERQKEEERLL  420
RERQREEERL QREQRRELER REKFLQKESI RAEKLRQKEE LRRVKEAARI KASNERAIAR  480
RMAKESMELI DDERLELMEL AASKKGLSSI LALDYETMQN LDLYQDEQTS FPPKSVQLKQ  540
AFSIQPWSDS DENVGNLLMV WKFLITFADV LGIWPFTLDE LIQAFHDYDS RLLGEIHIAL  600
LRCIIKDIED VARTPFTGLG ANQNNVANSG GGHPHVVEGA YLWGFDIRNW QSHLNPLTWP  660
EILRQFALSA GFGPKLKKRN IEQALSGNND EGSDGKDIIS NLRSGAAAKN AVAIMQEKGL  720
SNPRRSRHRL TPGTVKYAAF HVLSLEGSKG LNILEVADKI QKSGLRDLTT SKTPEASISA  780
ALSRDTKLFE RTAPSTYCVR PAYRKDPADS VAIYSAA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0211739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345637.10.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLK7KY040.0K7KY04_SOYBN; Uncharacterized protein
STRINGGLYMA06G44290.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator