PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0202329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 27290.9 Da PI: 7.7806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.6e-11 | 70 | 117 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR++iN+ + Lr+llP K+s ++ ++++YI +L Lj0g3v0202329.1 70 KKLNHNASERNRRNKINTLITLLRSLLPGK------KMSIQATISQVTRYIPEL 117 6789***********************998......999999999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.969 | 69 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-13 | 70 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-10 | 70 | 122 | No hit | No description |
Pfam | PF00010 | 2.5E-8 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-8 | 75 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLAFSATSVF SNSNIEWLLA EEPFSYNHHH NYLYNESVSS LEYAFPPHQP LQPPQAEEVK 60 RSMGPPSMAK KLNHNASERN RRNKINTLIT LLRSLLPGKK MSIQATISQV TRYIPELEQQ 120 VEGLIRKQEE LRSRISRQRD DAMDIGSKMT IPHDNSNFKV STSWINDNEA AIHISSCEVY 180 IMLNASSTET FEGRVFYNLH FQVEKAHRIE SCILTEKLLS IYEKKQSISN QLGGGAWH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1876 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0202329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146719 | 1e-41 | BT146719.1 Lotus japonicus clone JCVI-FLLj-11D4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162129.1 | 1e-68 | hypothetical protein PHAVU_001G126400g | ||||
TrEMBL | I3T1X1 | 6e-78 | I3T1X1_LOTJA; Uncharacterized protein | ||||
STRING | XP_007162129.1 | 5e-68 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-33 | bHLH family protein |