PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0202299.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 272aa    MW: 31475.8 Da    PI: 7.5345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0202299.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1274126155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ +hn++Er RR++iNs ++ Lr+llP  +   +  K s  ++ +k+ +YI +Lq
  Lj0g3v0202299.1  74 KKISHNANERDRRKKINSIISSLRSLLPVeD---QTHKKSFPATITKVLKYIPELQ 126
                      6789*************************66...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.51973125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-874129No hitNo description
PfamPF000107.6E-1074126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1374141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1175140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-679131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGWLSEEEPF SHNHNYFIKD SVPSSEYSLF PHQFSSPQSQ PPQLQPQLQL QPPQPQVELE  60
KPTATSPDDP IIVKKISHNA NERDRRKKIN SIISSLRSLL PVEDQTHKKS FPATITKVLK  120
YIPELQQEVV GLSERKEELL SIISHQFKEV NEESLGKKII HHNSDFIVSN SWLNDSEVAI  180
HISTYEAHNY KVPLSDILLY LENNGHFMLN ASSTETFEGR VFYNLHFQVE KAQRLDSNIL  240
TQMLLSIHEK KKKQRIFSSN MRLLKINRSS LL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0202299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353205.14e-92transcription factor ORG2-like
TrEMBLI3T1X11e-106I3T1X1_LOTJA; Uncharacterized protein
STRINGGLYMA03G28630.13e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-29bHLH family protein