PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0202299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 31475.8 Da PI: 7.5345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn++Er RR++iNs ++ Lr+llP + + K s ++ +k+ +YI +Lq Lj0g3v0202299.1 74 KKISHNANERDRRKKINSIISSLRSLLPVeD---QTHKKSFPATITKVLKYIPELQ 126 6789*************************66...9999***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.519 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-8 | 74 | 129 | No hit | No description |
Pfam | PF00010 | 7.6E-10 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-13 | 74 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-11 | 75 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-6 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGWLSEEEPF SHNHNYFIKD SVPSSEYSLF PHQFSSPQSQ PPQLQPQLQL QPPQPQVELE 60 KPTATSPDDP IIVKKISHNA NERDRRKKIN SIISSLRSLL PVEDQTHKKS FPATITKVLK 120 YIPELQQEVV GLSERKEELL SIISHQFKEV NEESLGKKII HHNSDFIVSN SWLNDSEVAI 180 HISTYEAHNY KVPLSDILLY LENNGHFMLN ASSTETFEGR VFYNLHFQVE KAQRLDSNIL 240 TQMLLSIHEK KKKQRIFSSN MRLLKINRSS LL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0202299.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027353205.1 | 4e-92 | transcription factor ORG2-like | ||||
TrEMBL | I3T1X1 | 1e-106 | I3T1X1_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA03G28630.1 | 3e-88 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-29 | bHLH family protein |