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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj0g3v0198619.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
NAC |
| Protein Properties |
Length: 358aa MW: 40103.7 Da PI: 8.3137 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj0g3v0198619.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.3 | 2.5e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeelvv+yLk kv++ +l++ +i+evd+yk++Pw+Lp+k+ +++e yfFs+rd+ky++g r+nra++sgyWkatg+dk++ls
Lj0g3v0198619.1 16 LPPGFRFHPTDEELVVHYLKSKVASMPLPV-AIIAEVDLYKFDPWELPSKAVFGQQERYFFSPRDQKYPNGARPNRAATSGYWKATGTDKPILS 108
79****************************.88***************77778999*************************************9 PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
Lj0g3v0198619.1 109 SdGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143
967788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MDCTESSSSR SHYPQLPPGF RFHPTDEELV VHYLKSKVAS MPLPVAIIAE VDLYKFDPWE 60
LPSKAVFGQQ ERYFFSPRDQ KYPNGARPNR AATSGYWKAT GTDKPILSSD GHQKVGVKKA 120
LVFYGGKPPK GVKTNWIMHE YRLVDKSFGP SFRTTTTHPP VPAHPSNCNK KNSLRLDDWV 180
LCRIYKKSNG TTTMPRPPPM ENDKEINTSK TMVPTMSTLS MLNTNQNTTP PSSRTYEPEG 240
LVENHDNFFH GYLTPDQSMQ NGNNNDTNDD NSFCVKRAIA PSQFLNESGS AGSSFSTKRF 300
HGDLNSGSSN TEENNNNSFV SLLSQLPQSA SFHANAILES VEDGVMRQQF QLPNINWN
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-71 | 16 | 189 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-71 | 16 | 189 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-71 | 16 | 189 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-71 | 16 | 189 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 7e-71 | 16 | 189 | 20 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 6e-71 | 16 | 189 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 6e-71 | 16 | 189 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 3e-68 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
