PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0195439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32029 Da PI: 8.9048 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.1e-08 | 249 | 286 | 6 | 47 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 +++Er RR ri +++ +L+el+P++ +k s ae+L +A Lj0g3v0195439.1 249 SIAERVRRTRISERIRKLQELVPNL----DKQTSTAEMLDLA 286 689*********************9....788*******998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.455 | 243 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-9 | 245 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-6 | 247 | 287 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-7 | 248 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-5 | 249 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MDSNSRYQLQ PNSGFLRFRS TLSSPQTNLK QGEGGAAANN GGGNQWGGFE PERLVPQFMN 60 SGNTERSHNY SEFVNEKLTN HNSSSSSPSS LSRMNFHLLR QSSSPAAHFS NIISFQNGHD 120 TTKGVGNYGG VNDSDGEQSL SMNRLNNQIS NGDTRNSGLR FPYDSWNETS FFSDKHIDSN 180 KERNGDDKLL SDAQNGELGN QVHTLTHHLS LPLPRKSSQL FAMDNLLEFT DSVPTNVRAK 240 RGFATHPRSI AERVRRTRIS ERIRKLQELV PNLDKQTSTA EMLDLAAV |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.104 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0195439.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352660.1 | 1e-102 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 3e-47 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A371HFP1 | 4e-92 | A0A371HFP1_MUCPR; Transcription factor bHLH130 (Fragment) | ||||
STRING | GLYMA03G29750.6 | 4e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5177 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42280.1 | 8e-32 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|