PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0195439.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 288aa MW: 32029 Da PI: 8.9048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0195439.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	249	286	6	47
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 +++Er RR ri +++ +L+el+P++ +k s ae+L +A Lj0g3v0195439.1 249 SIAERVRRTRISERIRKLQELVPNL----DKQTSTAEMLDLA 286 689*******************9....788*****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.455	243	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-9	245	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.81E-6	247	287	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-7	248	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	249	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDSNSRYQLQ PNSGFLRFRS TLSSPQTNLK QGEGGAAANN GGGNQWGGFE PERLVPQFMN 60 SGNTERSHNY SEFVNEKLTN HNSSSSSPSS LSRMNFHLLR QSSSPAAHFS NIISFQNGHD 120 TTKGVGNYGG VNDSDGEQSL SMNRLNNQIS NGDTRNSGLR FPYDSWNETS FFSDKHIDSN 180 KERNGDDKLL SDAQNGELGN QVHTLTHHLS LPLPRKSSQL FAMDNLLEFT DSVPTNVRAK 240 RGFATHPRSI AERVRRTRIS ERIRKLQELV PNLDKQTSTA EMLDLAAV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.104	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0195439.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027352660.1	1e-102	transcription factor bHLH130-like
Swissprot	Q66GR3	3e-47	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A371HFP1	4e-92	A0A371HFP1_MUCPR; Transcription factor bHLH130 (Fragment)
STRING	GLYMA03G29750.6	4e-92	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	8e-32	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]