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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0195189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 61aa MW: 7247.35 Da PI: 10.2326 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.9e-18 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Lj0g3v0195189.1 10 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 55 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.73E-16 | 1 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 1 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.994 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-12 | 14 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MNYLRPDIKR GNITPDEDDL IIRMHSLLGN RWSLIAGRIP GRTDNEIKNY WNTHLCKKLR 60 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0195189.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524093.1 | 4e-36 | transcription repressor MYB6 | ||||
Refseq | XP_017405792.1 | 3e-36 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_027906642.1 | 3e-36 | transcription repressor MYB6-like | ||||
Swissprot | Q38850 | 2e-29 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A371ETC3 | 1e-36 | A0A371ETC3_MUCPR; Transcription repressor MYB4 | ||||
STRING | GLYMA03G41965.1 | 9e-35 | (Glycine max) | ||||
STRING | XP_007135274.1 | 2e-34 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-31 | myb domain protein 5 |
Publications ? help Back to Top | |||
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