PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0192159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 363aa    MW: 41231 Da    PI: 4.2138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0192159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000723556122
                     EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                     + C  Cgk F++  + k+H ++
  Lj0g3v0192159.1 35 FYCVLCGKKFKSEKQWKNHEQS 56
                     78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-152277No hitNo description
SMARTSM004519.1E-63266IPR003604Zinc finger, U1-type
PROSITE profilePS501579.1823564IPR007087Zinc finger, C2H2
PfamPF121714.6E-113560IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803759IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAYEETVWAK VEEGEEASWF EEVEEEEEKK DENEFYCVLC GKKFKSEKQW KNHEQSKKHK  60
EKVAEFKDSL ADEEDLEAEV EGEEEDVGAE NGRPESEEGG IEVNDDQLEE VDDLEERIRD  120
GLNVAEEETR NEVKLNDDGD GNDDDDDDDD DFDATHSKES EKADVSVDFD DDENGFLEAM  180
VAGRKSKKPG ASTQKPKASV TPSQTENENE NVDENENENK NENDGVGFME YNNQKSTRKK  240
RRAKKEKGRV DEPHGAAFSA NYENRNSDGN NNSFAEESSS QYSVENEENG KENEQVGRDK  300
KSSNQPVDKK GTSKDAKTRA KTSSKGRKAK VRTYEHTCSP IPLSYMSWLL RYAAALLYCL  360
LFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RKKRRAKK
2238243KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0192159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1353730.0BT135373.1 Lotus japonicus clone JCVI-FLLj-21E2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524632.13e-83DNAJ protein JJJ1 homolog isoform X1
RefseqXP_014630906.12e-83DNAJ protein JJJ1 homolog isoform X2
RefseqXP_028231311.13e-83DNAJ protein JJJ1 homolog
TrEMBLI3S4H61e-155I3S4H6_LOTJA; Uncharacterized protein
STRINGGLYMA05G00445.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-13DNAJ heat shock N-terminal domain-containing protein