 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj0g3v0190909.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
TCP |
| Protein Properties |
Length: 329aa MW: 35039.1 Da PI: 10.4025 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj0g3v0190909.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 122.8 | 3.8e-38 | 95 | 188 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88
+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s +++++s+
Lj0g3v0190909.1 95 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsV--SVSLRGASNNSSlsspsld 186
79*************************************************************9999977732..2222222222222233333 PP
TCP 89 .k 89
k
Lj0g3v0190909.1 187 hK 188
30 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY 60
SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPIIC 120
AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSSVSVS LRGASNNSSL 180
SSPSLDHKPL LAPTPTPFIL GKRIRTDDDS SPAAKDDSVG HSLVGSAAPA GLWALPARPD 240
FGQIWSFAAA AAAAPEMVVQ PAVSVSASQQ QQASFFIHHQ QQQQHQQHQQ AMGEASAARV 300
GNYLPGHLNL LASLSGGHGN SGRRDDDHR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK240798 | 3e-74 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. |
| GenBank | AP004776 | 3e-74 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. |
| GenBank | AP014958 | 3e-74 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 3e-74 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
