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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0188229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 559aa MW: 60538.4 Da PI: 4.5843 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8.1e-09 | 37 | 79 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT eE e++++ ++ +G++ +++Ia+ + +t +c+++++k Lj0g3v0188229.1 37 NPWTSEEREIFLEKFAAFGKD-FRKIASFLD-YKTTADCVEFYYK 79 58*****************99.*********.9**********98 PP | |||||||
2 | Myb_DNA-binding | 22.8 | 2.1e-07 | 255 | 294 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l++av +G++ ++ Ia+++g +++l qck ++ Lj0g3v0188229.1 255 WTDGEKAGLLQAVSSFGKD-FAMIAQCVG-TKSLDQCKVFFC 294 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-14 | 22 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.977 | 34 | 85 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-9 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-6 | 37 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-6 | 38 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.444 | 250 | 301 | IPR017884 | SANT domain |
SMART | SM00717 | 8.3E-5 | 251 | 299 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-9 | 252 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-5 | 253 | 296 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-4 | 255 | 295 | No hit | No description |
Pfam | PF00249 | 1.7E-5 | 255 | 295 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MPALILDQKE KTISKFLSSN GLVEDPLAIE KERSIVNPWT SEEREIFLEK FAAFGKDFRK 60 IASFLDYKTT ADCVEFYYKN HKSDYFEKIK KKDGGKLKKL FRVKTDLLAS SKRCNREVNA 120 ASLEMLNAAS VMADGIARNR KLRSGRSLWR GHGDTKTSRG KESIKERPSS FDILQDERET 180 VAADVLAGIC GSLSSEAMSS GMTGSVHAVD VNNDRNGVNV TSLSEQQPLM PDVTQNIDDG 240 TFSGQSGGEL DSADWTDGEK AGLLQAVSSF GKDFAMIAQC VGTKSLDQCK VFFCKAQKTL 300 RMNPPISENI GSLVNADANS GRSDSDDACN EERGSVIGTD TSGIKAGEEL ASSVMNSYHE 360 SNPVEARNVT KGKSILDTDG DEDVLYSSDK SGSVRDERAM IVSDSIEIEK DKLNEMGGAV 420 TELVPASKIE PCHSNSVAED RLVSEVSSAC HGNELEGSLS CLYRDNLLEA DTDVGDELKN 480 KIYDSSTTLN ASVSPIEISC PRLISDAENQ PQHCLDEKPP FSGSSEDPST TVNSVLQDTA 540 GASLPCEKTA SQKLLSSIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-17 | 1 | 87 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-17 | 1 | 87 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0188229.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489929.1 | 0.0 | uncharacterized protein LOC101505283 isoform X1 | ||||
Refseq | XP_004489930.1 | 0.0 | uncharacterized protein LOC101505283 isoform X1 | ||||
Refseq | XP_004489931.1 | 0.0 | uncharacterized protein LOC101505283 isoform X2 | ||||
TrEMBL | A0A1S2XK90 | 0.0 | A0A1S2XK90_CICAR; uncharacterized protein LOC101505283 isoform X2 | ||||
TrEMBL | A0A1S2XL56 | 0.0 | A0A1S2XL56_CICAR; uncharacterized protein LOC101505283 isoform X1 | ||||
TrEMBL | A0A2Z6P6F7 | 0.0 | A0A2Z6P6F7_TRISU; Uncharacterized protein | ||||
STRING | XP_004489929.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 2e-60 | MYB family protein |