PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0186939.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 221aa    MW: 24957 Da    PI: 4.4683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0186939.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.5e-0658981055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + R +++ +++  L   +P+      kK++  +iL kA +Y+k+Lq
  Lj0g3v0186939.1 58 KERQRELSEKLLALSATIPSM-----KKMDNTSILDKASNYVKQLQ 98
                     679999**************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6554897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-553103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1158115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1058111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-559102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVESGENWPC DHSVLEVGGG GDDDDVKDLC FEDEFIGDDN DDGHSFAEET VDPLTDRKER  60
QRELSEKLLA LSATIPSMKK MDNTSILDKA SNYVKQLQER VRELEQEVDQ SHIRSNKGTT  120
SCEVNSENYR TGGRTNENFP EVRVRVLQKE VMVIIHCEKQ KGIMLKILSH LENLHLSVAN  180
TSVLQFGKST LDITIIAQMG DEYNMTVDEL VKTLRVAILT Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0186939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344889.12e-99transcription factor NAI1-like isoform X2
TrEMBLA0A445JI442e-83A0A445JI44_GLYSO; Transcription factor bHLH19
TrEMBLA0A445JRD52e-83A0A445JRD5_GLYSO; Transcription factor bHLH25 isoform A
TrEMBLC6T9Q92e-83C6T9Q9_SOYBN; Uncharacterized protein
STRINGGLYMA07G03100.13e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1460568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-27bHLH family protein