PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0173869.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 275aa    MW: 30312.9 Da    PI: 7.0798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0173869.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16113159455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Lj0g3v0173869.2 113 FHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 159
                      5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-20106169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-21106169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.777109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-18112163No hitNo description
PfamPF000101.6E-13113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-18115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEGGSSNLHR TQPPPLTRAS PPDSEDFTTL FNHLLHHPPP PDMDPHNSGS GFNFSDPYVN  60
NACFPDPHDI TSFKQHQNFT SIEKNVAEAS ELPSNSVPRP RSSSSKRSRA AEFHNLSEKR  120
RRSKINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLMMRNG LSLHPMSLSG  180
GLRPSIFPQT GLNIDEGNGF RNSVSANDES LVRSAFSFPE HCSISNQSIP SVTNIATLDT  240
SSSFQLSIKD ALGSNMPQMF LDTAKIGKPP SPDLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0173869.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477270.0BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027330872.11e-119transcription factor SPATULA-like
TrEMBLA0A0B2RMD11e-104A0A0B2RMD1_GLYSO; Transcription factor SPATULA
TrEMBLK7M5M61e-104K7M5M6_SOYBN; Uncharacterized protein
TrEMBLK7M5M71e-104K7M5M7_SOYBN; Uncharacterized protein
STRINGGLYMA14G09231.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.13e-26bHLH family protein