PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0173869.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 30312.9 Da PI: 7.0798 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.4 | 4e-16 | 113 | 159 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Lj0g3v0173869.2 113 FHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 159 5*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-20 | 106 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-21 | 106 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.777 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.13E-18 | 112 | 163 | No hit | No description |
Pfam | PF00010 | 1.6E-13 | 113 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-18 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEGGSSNLHR TQPPPLTRAS PPDSEDFTTL FNHLLHHPPP PDMDPHNSGS GFNFSDPYVN 60 NACFPDPHDI TSFKQHQNFT SIEKNVAEAS ELPSNSVPRP RSSSSKRSRA AEFHNLSEKR 120 RRSKINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLMMRNG LSLHPMSLSG 180 GLRPSIFPQT GLNIDEGNGF RNSVSANDES LVRSAFSFPE HCSISNQSIP SVTNIATLDT 240 SSSFQLSIKD ALGSNMPQMF LDTAKIGKPP SPDLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0173869.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 0.0 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027330872.1 | 1e-119 | transcription factor SPATULA-like | ||||
TrEMBL | A0A0B2RMD1 | 1e-104 | A0A0B2RMD1_GLYSO; Transcription factor SPATULA | ||||
TrEMBL | K7M5M6 | 1e-104 | K7M5M6_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7M5M7 | 1e-104 | K7M5M7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G09231.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 3e-26 | bHLH family protein |