PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0173869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 274aa MW: 30184.7 Da PI: 6.8625 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.4 | 4e-16 | 112 | 158 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Lj0g3v0173869.1 112 FHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 158 5*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-20 | 105 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-21 | 105 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.777 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.29E-18 | 111 | 162 | No hit | No description |
Pfam | PF00010 | 1.6E-13 | 112 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-18 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEGGSSNLHR TQPPPLTRAS PPDSEDFTTL FNHLLHHPPP PDMDPHNSGS GFNFSDPYVN 60 NACFPDPHDI TSFKQHQNFT SIENVAEASE LPSNSVPRPR SSSSKRSRAA EFHNLSEKRR 120 RSKINEKMKA LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQMLMMRNGL SLHPMSLSGG 180 LRPSIFPQTG LNIDEGNGFR NSVSANDESL VRSAFSFPEH CSISNQSIPS VTNIATLDTS 240 SSFQLSIKDA LGSNMPQMFL DTAKIGKPPS PDLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0173869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 0.0 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027330872.1 | 1e-118 | transcription factor SPATULA-like | ||||
TrEMBL | A0A0B2RMD1 | 1e-104 | A0A0B2RMD1_GLYSO; Transcription factor SPATULA | ||||
TrEMBL | K7M5M6 | 1e-104 | K7M5M6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G09231.1 | 1e-104 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 2e-26 | bHLH family protein |