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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0166299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 60aa MW: 6656.75 Da PI: 9.5768 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 14 | 48 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRt 36 rg+W + Ed ll ++++ +G g+W++ +++ g + + Lj0g3v0166299.1 14 RGPWLPREDALLTKYIRDHGEGQWRSLPKRAGnT--S 48 89*****************************942..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.9E-7 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 9 | 52 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.1E-6 | 14 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-5 | 16 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWLPR EDALLTKYIR DHGEGQWRSL PKRAGNTSLS LCPVCSLSHL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0166299.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016181640.1 | 4e-24 | myb-related protein 308 | ||||
Refseq | XP_019424275.1 | 4e-24 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_025631723.1 | 4e-24 | myb-related protein 308 | ||||
Swissprot | Q9FJ07 | 1e-16 | MY111_ARATH; Transcription factor MYB111 | ||||
Swissprot | Q9LTC4 | 9e-17 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A2K3LCI7 | 3e-23 | A0A2K3LCI7_TRIPR; MYB-related protein hv1-like | ||||
STRING | GLYMA19G44660.1 | 7e-23 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27147 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-19 | myb domain protein 15 |