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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj0g3v0164269.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
GATA |
Protein Properties |
Length: 247aa MW: 26821.7 Da PI: 7.6792 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj0g3v0164269.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 53.3 | 3.7e-17 | 194 | 228 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +
Lj0g3v0164269.1 194 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANR 228
********************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MYSSMNIPDQ IKDNDGENHN HYDSHTLDDG GGGGGGVEDV STDNAYGSGG VGHELSIPPC 60 DDSSQLTISF RGQVYVFDSV TPEKVQAVLL LLGGCELSSG SQGLEISPTN QRGSAEFPAK 120 CSLPQRAASL IRFRQKRKER CFDKKVRYGV RQEVALRMQR NKGQFTSAKK QDGTNSWGAD 180 QDSVQDLVQS ETSCTHCGTS SKSTPMMRRG PSGPRSLCNA CGLFWANRRF ACQPTVGTDP 240 VFASRRD
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Lja.5647 | 0.0 | cell culture| floral bud| flower| pod| root |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G24470.2 | 5e-70 | GATA-type zinc finger protein with TIFY domain |