PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0163799.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Whirly | ||||||||
Protein Properties | Length: 259aa MW: 28371.6 Da PI: 9.7446 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 174.8 | 1.8e-54 | 76 | 216 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanata..erkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 s+yk+ka l++ ++ p+f+ ldsg++k++r+G +l+++a+a++ +r ydW++kq+f+ls+ e++ l++l++++scef dp++++s+eGk+rk Lj0g3v0163799.2 76 SLYKGKAVLTLSPKPPEFSMLDSGAVKVSREGYILFQFAPAVGggTRLYDWNRKQVFSLSVNEMGALISLGARGSCEFVRDPFKGKSDEGKIRK 169 68***************************************95338************************************************ PP Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +lkvePl dGsG+++nlsv+n+l +++es+ vPv+kae av++sl++ Lj0g3v0163799.2 170 VLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFN 216 ******************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.2E-67 | 68 | 234 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.26E-61 | 69 | 247 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.2E-51 | 77 | 213 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVHSIAIKPC PIPTHSFITT KSITFRGFSP SSSATPTTSL TLPSLSVKCR QTELFDSPQR 60 PPPPPDLPPR VYVDHSLYKG KAVLTLSPKP PEFSMLDSGA VKVSREGYIL FQFAPAVGGG 120 TRLYDWNRKQ VFSLSVNEMG ALISLGARGS CEFVRDPFKG KSDEGKIRKV LKVEPLLDGS 180 GHLFNLSVQN KLKNVDESIF VPVTKAELAV FNSLFNFILP YLLGWNAFGN SIKPGVYSRV 240 HNASQDTEQN MNGTVGDNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 3e-83 | 67 | 233 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 3e-83 | 67 | 233 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 3e-83 | 67 | 233 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 3e-83 | 67 | 233 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4254 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0163799.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028792530.1 | 1e-102 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 1e-92 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1S2XIW0 | 4e-96 | A0A1S2XIW0_CICAR; single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 | ||||
STRING | XP_004490009.1 | 5e-96 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 2e-89 | ssDNA-binding transcriptional regulator |