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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0160869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28307.9 Da PI: 4.0979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 18 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eE+e++++ +k lG++ W+ Ia++++ gRt++++k++w++ Lj0g3v0160869.1 18 RGHFTQEEEEIIIRMHKNLGNR-WSIIAAELP-GRTDNEVKNHWHT 61 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-17 | 9 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 10 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.435 | 13 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 18 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.72E-13 | 21 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLHWFFMQVY YLRPDIKRGH FTQEEEEIII RMHKNLGNRW SIIAAELPGR TDNEVKNHWH 60 TSLKRRVQQN EEAKVSNSKN EGPTSGNGIG SLQVTPPATS QISDSTGALS PFSSSSEFSC 120 ISSDLNTTSS SNEKLVFEDD FDFLDAFAEH VNEKFWSELQ IDANGALQNQ DTTQILDACA 180 LSPNQSSSQS LALDNALGNF LDANTDPTID NFWGQPYVTD TSFAAESEYF SIGYDADLWS 240 QSDLYDEPFC LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-16 | 11 | 67 | 52 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7561 | 1e-140 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0160869.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009750 | 1e-81 | AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348209.1 | 1e-90 | transcription factor MYB14-like | ||||
TrEMBL | A0A445KG29 | 4e-71 | A0A445KG29_GLYSO; Transcription factor MYB14 isoform B | ||||
STRING | GLYMA06G45547.1 | 6e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 3e-27 | myb domain protein 15 |