PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0151119.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 321aa    MW: 35471.3 Da    PI: 6.5238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0151119.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.8e-12154198554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er+RR+++ ++f  L  l+P +     kK++K+++L+ A++Y+k+L
  Lj0g3v0151119.1 154 HIMAERKRREKLSQSFIALAALVPGL-----KKMDKSSVLTDAIKYVKEL 198
                      999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12154203No hitNo description
PfamPF000101.8E-9154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMLVVDDKEF LSNDDIASVL QKQTLQQSLS SDCTSITLSN SFTDETSFDF ADTPSITENF  60
SPELSPSSSI SSFKSQILFL DNTNSSPATN TTTQISGFDS STLNPKQNET VLVPLPQLGN  120
THISTQNSKG SSKNQNFETK SSHGKRSPAH HHDHIMAERK RREKLSQSFI ALAALVPGLK  180
KMDKSSVLTD AIKYVKELKE RLAVLEEQSK KTKVESVVVP INKPAPELCG GDNDDESLVQ  240
VESRVSEQDM LIRILCKKQK RLLTKILAEI QSFQLSVVNS SILPFGDSMD ITIIAQMGEG  300
YDLTAKELVK KLRVAILKFM S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0151119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507581.11e-124transcription factor bHLH18
TrEMBLA0A2Z6BDF11e-126A0A2Z6BDF1_GLYUR; BHLH transcription factor 3
STRINGXP_007155779.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-52bHLH family protein