PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0150929.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 267aa    MW: 30709.5 Da    PI: 6.1066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0150929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-21115166156
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GVr+++ +grW+AeIrd       + kr++lg+++taeeAa  +++a+ +++g+
  Lj0g3v0150929.1 115 SKYRGVRQRP-WGRWAAEIRDsI-----TrKRVWLGTYDTAEEAAMVYDRAAINYRGA 166
                      89********.**********33.....35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-21115172IPR016177DNA-binding domain
PfamPF008474.5E-15115165IPR001471AP2/ERF domain
CDDcd000189.16E-32115171No hitNo description
SMARTSM003801.2E-32116179IPR001471AP2/ERF domain
PROSITE profilePS5103222.089116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-27116172IPR001471AP2/ERF domain
PRINTSPR003676.7E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.7E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMKTGDTIRL KHRRDSATNF LNFHAPMEGT TIFREHKAIT TKLLNSANFI MSPKVIRISV  60
MDHYATDSSS EEEEEDCLPR GKKVVNEIRF CKTSSCSSKN NNNNNKRQQD HNNVSKYRGV  120
RQRPWGRWAA EIRDSITRKR VWLGTYDTAE EAAMVYDRAA INYRGAGAVT NLIKPPPSHQ  180
KEKNDEVESL IYNNSKDHDL CYLSSPTSVI VVMPAEEMGV ETLDKPLLPI VTNDNNCIDF  240
DVPFHLEEDF ESCKWDLDDY FNEPWAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18117172359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-18117172662ATERF1
3gcc_A2e-18117172662ATERF1
5wx9_A8e-181151721371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0150929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206265.18e-62pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A151QZ032e-60A0A151QZ03_CAJCA; Ethylene-responsive transcription factor CRF4
STRINGGLYMA16G08683.13e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-34cytokinin response factor 5