PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0147679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 23789.3 Da PI: 6.7193 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 16 | 94 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd++l+++++ +G g W++Ia++++ gRt++++k++w++ Lj0g3v0147679.1 16 KGPWTIEEDLILINYIANHGEGvwntlaksaaskqrhhfqyvpkdlqhlitlvflyEWSKIAKHLP-GRTDNEIKNFWRT 94 79****************************************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.193 | 11 | 100 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.23E-13 | 13 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 15 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-10 | 15 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-6 | 16 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-8 | 18 | 94 | No hit | No description |
Pfam | PF00249 | 7.7E-8 | 61 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 87 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDKKPCNSSH DPEVRKGPWT IEEDLILINY IANHGEGVWN TLAKSAASKQ RHHFQYVPKD 60 LQHLITLVFL YEWSKIAKHL PGRTDNEIKN FWRTRIQKHI KQAESLQQQQ SSSEINDHHQ 120 TSTSQMSTMA EPMDTYSPHS SSYHHHQGTL NLEPSSFPLS HQFPTTITTH DHPSSCCTND 180 NNSNNNSNIN FWSMEDIWSM QLLNGD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.8243 | 1e-110 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0147679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Y11105 | 3e-42 | Y11105.1 P.sativum mRNA for Myb-like protein (Myb26). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027927196.1 | 8e-75 | myb-related protein 305-like | ||||
Swissprot | P81391 | 8e-51 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A371FNT3 | 9e-75 | A0A371FNT3_MUCPR; Myb-related protein 305 | ||||
STRING | GLYMA16G07960.1 | 5e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 7e-41 | myb domain protein 24 |
Publications ? help Back to Top | |||
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