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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj0g3v0141269.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
ARF |
Protein Properties |
Length: 671aa MW: 73604.5 Da PI: 7.72 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj0g3v0141269.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 57.3 | 2.9e-18 | 106 | 187 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f k+lt+sd+++ g +++p+ +ae++ +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF + +++el+v
Lj0g3v0141269.1 106 FAKTLTQSDANNGGGFSVPRYCAEAI---------------HGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFL--RAENGELYV 182
77888889999888899888888444...............7899**************************************..449999*** PP
EEE-S CS
B3 95 kvfrk 99
+++r+
Lj0g3v0141269.1 183 GIRRA 187
***97 PP
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2 | Auxin_resp | 117.1 | 1.5e-38 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++FevvY+Prast+eF++k++ v++a++v+++ GmRfkm fetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
Lj0g3v0141269.1 258 AVTLAASNQPFEVVYYPRASTPEFCIKASAVKAAMRVQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPVRWPNSPWRLLQ 341
678899****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 671 aa
Download sequence Send
to blast |
MKEGEKSLDP QLWHACAGGM VQMPQVNSRV FYFPQGHAEH AHTNVDLRGS LPPFILCNVA 60 AVKFMADPET DEVFAKMRLV PLRNSELGLG EEGGEVLENS EKPASFAKTL TQSDANNGGG 120 FSVPRYCAEA IHGELWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSV VFLRAENGEL 180 YVGIRRAKKG IGGGGGGGSE VSSGWSSASG SGNCGIGPYG AFSFFLREEN KTLRNGCVGG 240 GGDLSGRARV RPEAVIEAVT LAASNQPFEV VYYPRASTPE FCIKASAVKA AMRVQWCSGM 300 RFKMPFETED SSRISWFMGT IASVQVVDPV RWPNSPWRLL QVNWDEPDLL QNVKRVSPWL 360 VELVSNMPAI HFTPFSPPRK KLRFPQHPDF PLDVRFPTPT FSGNQLGPNV PLICLSDNAP 420 ASIQGARHAQ IGISLSDIHL SNKLQLGLFP TNIQLHSGIS NGNMTNHDES KESLSCLLTM 480 GKSIKSLEKS VDVKKHQFLL FGQPILTEQQ ISNSCSREVL SHNNSGKNSL AVNEDKEKCF 540 FDSPGKASSA EFSWQLGLDT GHCKVFLESE DVGRSLDLSC LGSYEELYMR LANLFGLERS 600 EMLNHVLYRD ATGAVKQTGE EPFSDFMKTA KRLTILTDSG SKSIRAWITG TRNGEHGLDA 660 SNQTGPLSIF A
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |