PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SBP

Protein Properties

Length: 431aa MW: 47222.3 Da PI: 7.9317

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0140659.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.2e-42	173	249	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dls+akeyhr+h+vC+ hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Lj0g3v0140659.1 173 CQVEGCGLDLSSAKEYHRKHRVCDSHSKSPKVVIAGLERRFCQQCSRFHALSEFDDNKRSCRRRLSDHNARRRKPQP 249 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-33	166	234	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.274	170	247	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-39	172	252	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.7E-32	173	246	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MDWNVKSLGQ WDWEHFFLNS KATENPTSQP TDWSSEADRE INVGVLYPSG SSGGYSGSEL 60 IHAATSSRSS KSPSNISSSN GDSKTSMLTL EGSPDDSIGK KELTKGEPVD TSTEAEPSSV 120 SGEPLLTLKL GKRLYFEDVC AGIDSKKSPA SGVTISSGKR CKSSNQNLQH TSCQVEGCGL 180 DLSSAKEYHR KHRVCDSHSK SPKVVIAGLE RRFCQQCSRF HALSEFDDNK RSCRRRLSDH 240 NARRRKPQPE AVQLNPSALS SSTYGINHKD GRKIMSPFAF SRTATNLAWQ DMHSSKLPQT 300 KDFLLKTAKA FNKTSSISPM LSADSSRLLT SKGIGTKIIV PGIEDSTTSS TQEVNRALSL 360 LSINSWGAYE TKSLSLEHSN QSIANAMTLP SSEYWPSDQL SYSDCDNSNR FQDFQLLSAP 420 FESGFPCNQL D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MDWNVKSLGQ WDWEHFFLNS KATENPTSQP TDWSSEADRE INVGVLYPSG SSGGYSGSEL  60
IHAATSSRSS KSPSNISSSN GDSKTSMLTL EGSPDDSIGK KELTKGEPVD TSTEAEPSSV  120
SGEPLLTLKL GKRLYFEDVC AGIDSKKSPA SGVTISSGKR CKSSNQNLQH TSCQVEGCGL  180
DLSSAKEYHR KHRVCDSHSK SPKVVIAGLE RRFCQQCSRF HALSEFDDNK RSCRRRLSDH  240
NARRRKPQPE AVQLNPSALS SSTYGINHKD GRKIMSPFAF SRTATNLAWQ DMHSSKLPQT  300
KDFLLKTAKA FNKTSSISPM LSADSSRLLT SKGIGTKIIV PGIEDSTTSS TQEVNRALSL  360
LSINSWGAYE TKSLSLEHSN QSIANAMTLP SSEYWPSDQL SYSDCDNSNR FQDFQLLSAP  420
FESGFPCNQL D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-27	173	246	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00161	DAP	Transfer from AT1G27360	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0140659.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029129944.1	0.0	squamosa promoter-binding-like protein 12 isoform X2
TrEMBL	A0A0B2QW82	0.0	A0A0B2QW82_GLYSO; Squamosa promoter-binding-like protein 12
TrEMBL	K7MP80	0.0	K7MP80_SOYBN; Uncharacterized protein
STRING	GLYMA18G00903.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4630	30	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-53	squamosa promoter binding protein-like 2