PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj0g3v0140319.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 307aa MW: 33945.1 Da PI: 8.709

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0140319.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.8	9.9e-35	20	129	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec..eaesssssa 82 +g+kdrhsk+hT++g+RdRRvRl a++a++f+ +qd+LG+d++sk+ +WL+++akp+i++l++ ++s +s+c + +++ Lj0g3v0140319.1 20 TGRKDRHSKVHTSKGPRDRRVRLAAHTAIEFYHVQDRLGYDRPSKAMDWLIKKAKPSIDKLVEAqsagssgmaigEQSESSSCynF--QLQKQL 111 79**************************************************************5555555555433333444321..222222 PP TCP 83 snsssg................k 89 g + Lj0g3v0140319.1 112 -----GdnpasstnnstqdfglS 129 .....111111122222233330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-31	20	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.812	22	80	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MKSTVGEINE VEGGHFVRST GRKDRHSKVH TSKGPRDRRV RLAAHTAIEF YHVQDRLGYD 60 RPSKAMDWLI KKAKPSIDKL VEAQSAGSSG MAIGEQSESS SCYNFQLQKQ LGDNPASSTN 120 NSTQDFGLSL NSFQHHPGLI PWQSQQGGEN HAASNEHQTF FAGSTDPVGF RNHYHQRILT 180 WNWNNEATSD HVNKVGFKVN SEQFLGQGSC SAYSRSGTTL QPSFSTSVRA WNDIPMASSD 240 HHHRSQTLHQ ASIFRSRFLP DEGVVRFGNI SDKIQGEEEN NGVAPNKPSS ASPSSHHSPQ 300 KAEHSNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	27	80	1	54	Putative transcription factor PCF6
5zkt_B	1e-19	27	80	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0140319.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505518.1	1e-106	transcription factor TCP4
Refseq	XP_027929171.1	1e-106	transcription factor TCP4-like isoform X1
Refseq	XP_027929172.1	1e-106	transcription factor TCP4-like isoform X1
Refseq	XP_027929173.1	1e-106	transcription factor TCP4-like isoform X1
TrEMBL	A0A1S2YJM2	1e-104	A0A1S2YJM2_CICAR; transcription factor TCP4
TrEMBL	A0A4D6NCT2	1e-105	A0A4D6NCT2_VIGUN; Transcription factor TCP subgroup
STRING	XP_004505518.1	1e-105	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-39	TCP domain protein 10