PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0134409.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 346aa    MW: 38290.9 Da    PI: 5.1008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0134409.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13135186155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Lj0g3v0134409.1 135 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 186
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.85E-14133190No hitNo description
SuperFamilySSF474591.44E-16134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13135205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYNYKDY LYSLVGGNPP SEGSNWNRHE YGSFAEEEKA LLGIINSNIE  60
HNLHANWDSS TSPSVVQNVK DQCDSHSSPE ACIIDYSSPG TDNLPPSITT AATVTGRRKR  120
RCTKSAKNQE DIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYVQRGD QASIIGGAIN  180
FVKELEQLLQ CMKGRNIKTK EQQQQWHEDG SSSSPFAEFF MFPQYSTRAT SEGSTSYPNT  240
CCEATVAQNQ NRPPAAADIE VTLVDGHANI KILSKKQPGQ LVKMVLGMQS LGFIILHLNV  300
TTVEDMVLAS VSVKVEEGCE LNTVDEIAAA MNQLSSTVQE EAASFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135146RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.22161e-137root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0134409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9288587e-38CU928858.2 Medicago truncatula chromosome 5 clone mth4-5i12, COMPLETE SEQUENCE.
GenBankFP0161597e-38FP016159.1 Medicago truncatula chromosome 5 clone mth2-188h20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544814.11e-157transcription factor bHLH96
RefseqXP_028198704.11e-157transcription factor bHLH96-like
TrEMBLA0A445H7901e-156A0A445H790_GLYSO; Transcription factor bHLH96
TrEMBLI1MAX11e-156I1MAX1_SOYBN; Uncharacterized protein
STRINGGLYMA14G35560.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-84bHLH family protein