PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0131909.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 370aa    MW: 40243.7 Da    PI: 8.7719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0131909.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12298343655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Lj0g3v0131909.1 298 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 343
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16295358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-12296345No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14297355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9298343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDSNQNYQLQ QQNQSSSGLL RFRSAPSSFL SNLTPSVINN ERLLNRFASY GAADTNSISI  60
SCNDTSAASP SFQDFEENKP FSKGMNSQQQ GYGGAGASAG LPPHYPRHGS SSAAMDGYLL  120
RQGSSPASLF SNGSFQNGFG AMKCVGNYDA VNGNNGQISP SIDRLKSQIS FSSRSASSLG  180
MLSQISEIEG EEDIGATSPD DGRQGGGNGH GFPYTSWNDT PQLSENFIGL KRGRSGNERM  240
FSELQNGELG SQVHTLTHHL SLPKTSAEMA AMDKLLQFPD SVPCKIRAKR GCATHPRSIA  300
ERVRRTRISE RMRKLQELVP NMDKQTNTSD MLDLAVDYIK DLQKQFKTLS EKRAKCKCVS  360
TQKAETNPIA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0131909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150418e-41AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519049.11e-162transcription factor bHLH130
SwissprotQ66GR32e-92BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0B2R3641e-160A0A0B2R364_GLYSO; Transcription factor bHLH130
TrEMBLI1JG311e-160I1JG31_SOYBN; Uncharacterized protein
STRINGGLYMA02G29830.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]