PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0131909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 40243.7 Da PI: 8.7719 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 298 | 343 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq Lj0g3v0131909.1 298 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 343 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 292 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-16 | 295 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.33E-12 | 296 | 345 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-14 | 297 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-11 | 298 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 298 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDSNQNYQLQ QQNQSSSGLL RFRSAPSSFL SNLTPSVINN ERLLNRFASY GAADTNSISI 60 SCNDTSAASP SFQDFEENKP FSKGMNSQQQ GYGGAGASAG LPPHYPRHGS SSAAMDGYLL 120 RQGSSPASLF SNGSFQNGFG AMKCVGNYDA VNGNNGQISP SIDRLKSQIS FSSRSASSLG 180 MLSQISEIEG EEDIGATSPD DGRQGGGNGH GFPYTSWNDT PQLSENFIGL KRGRSGNERM 240 FSELQNGELG SQVHTLTHHL SLPKTSAEMA AMDKLLQFPD SVPCKIRAKR GCATHPRSIA 300 ERVRRTRISE RMRKLQELVP NMDKQTNTSD MLDLAVDYIK DLQKQFKTLS EKRAKCKCVS 360 TQKAETNPIA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0131909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 8e-41 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519049.1 | 1e-162 | transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 2e-92 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A0B2R364 | 1e-160 | A0A0B2R364_GLYSO; Transcription factor bHLH130 | ||||
TrEMBL | I1JG31 | 1e-160 | I1JG31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G29830.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5177 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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