PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj0g3v0126899.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 387aa MW: 42699 Da PI: 6.8937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0126899.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.8e-06	358	384	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + Lj0g3v0126899.1 358 SHSLAERVRREKISERMKLLQDLVPGC 384 8************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.44E-4	352	386	No hit	No description
SuperFamily	SSF47459	2.22E-7	352	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.776	354	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-7	354	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MENQFFLNAG VSHPMQFEPS PPPNSSMPTW QSLSSAMEIQ SNVLNYPSEQ TQDFFYSSTW 60 DKSTDHHHQP LQFDSALSSM VSSPAESNEN FVMRELIGKL GAVGNSDHEI SPHSHHNSCY 120 STPLSSPPKL NHIAPMMMNH LVKENFPKPM ALNSSVAEFS ADPGFAERAA KFSCFGSRSF 180 NERRSTTSQL VVNNNAELAP QRSATVIENG RLHRVSSSPS LKTFGSQLQD HEKMEVANSQ 240 EESTISEQTP NGELGVKASD TNPRKRKASS KGKAKEPSNY FNPTKGVEGS GEETNAKRSK 300 QNEGEGNEND PTKVEEESKG GASNSGEEKQ NKGNTTKPPE PPKDYIHVRA RRGQATDSHS 360 LAERVRREKI SERMKLLQDL VPGCNKV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MENQFFLNAG VSHPMQFEPS PPPNSSMPTW QSLSSAMEIQ SNVLNYPSEQ TQDFFYSSTW  60
DKSTDHHHQP LQFDSALSSM VSSPAESNEN FVMRELIGKL GAVGNSDHEI SPHSHHNSCY  120
STPLSSPPKL NHIAPMMMNH LVKENFPKPM ALNSSVAEFS ADPGFAERAA KFSCFGSRSF  180
NERRSTTSQL VVNNNAELAP QRSATVIENG RLHRVSSSPS LKTFGSQLQD HEKMEVANSQ  240
EESTISEQTP NGELGVKASD TNPRKRKASS KGKAKEPSNY FNPTKGVEGS GEETNAKRSK  300
QNEGEGNEND PTKVEEESKG GASNSGEEKQ NKGNTTKPPE PPKDYIHVRA RRGQATDSHS  360
LAERVRREKI SERMKLLQDL VPGCNKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0126899.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027336099.1	1e-168	transcription factor bHLH62-like
TrEMBL	A0A371HQB3	1e-163	A0A371HQB3_MUCPR; Transcription factor bHLH62 (Fragment)
STRING	GLYMA18G32560.1	1e-151	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-67	bHLH family protein