PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0121629.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 364aa MW: 38738.2 Da PI: 6.5723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0121629.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	174	219	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Lj0g3v0121629.1 174 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 219 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.37E-13	167	223	No hit	No description
SuperFamily	SSF47459	4.06E-17	167	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	171	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	174	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MQPPPEMQQD LNSLFDSPQI QINHHDLNNF QPTPHDDFLK QMLSTTNPWS LDAADGNVAA 60 AFPYDAEHAN LASKFRNHQI SDKALMLLMS TAANSGLLHM PPSLGGAGGF ESTPNDGFNG 120 FTGSIQEQSN QTHHFQHPQG QSFGATPNQA PAAGNPGPPK QRVRARRGQA TDPHSIAERL 180 RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQV QVKVLSMSRL GGASAVAPLV 240 ADMSSEAGGG DCNGTRSHPR NSQKMTASSS NDSLTVTEQQ VAKLMDEDMG SAMQYLQGKG 300 LCLMPISLAT AVSAATCHAR NPLMNAGHNI NNNPSPVIGS NGDNGPSSPG MSANSIVKDA 360 ASVG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MQPPPEMQQD LNSLFDSPQI QINHHDLNNF QPTPHDDFLK QMLSTTNPWS LDAADGNVAA  60
AFPYDAEHAN LASKFRNHQI SDKALMLLMS TAANSGLLHM PPSLGGAGGF ESTPNDGFNG  120
FTGSIQEQSN QTHHFQHPQG QSFGATPNQA PAAGNPGPPK QRVRARRGQA TDPHSIAERL  180
RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQV QVKVLSMSRL GGASAVAPLV  240
ADMSSEAGGG DCNGTRSHPR NSQKMTASSS NDSLTVTEQQ VAKLMDEDMG SAMQYLQGKG  300
LCLMPISLAT AVSAATCHAR NPLMNAGHNI NNNPSPVIGS NGDNGPSSPG MSANSIVKDA  360
ASVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.1331	0.0	floral bud\| flower\| pod\| protoplast

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0121629.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507723.1	1e-143	transcription factor bHLH66-like
Swissprot	Q9ZUG9	5e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S2YP07	1e-141	A0A1S2YP07_CICAR; transcription factor bHLH66-like
STRING	XP_004507723.1	1e-142	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	6e-71	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]