PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0117159.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 497aa    MW: 57058.5 Da    PI: 6.076
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0117159.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09290330346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l++a  q+G++ Wk+Ia+ ++  + + ++k+ w+ 
  Lj0g3v0117159.2 290 KWTPEELDFLLKAQDQHGSD-WKLIAEALN--KHRLHVKDTWRR 330
                      8*******************.********8..567788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.391210278IPR017877Myb-like domain
SMARTSM007171.2E-4214285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-7216304IPR009057Homeodomain-like
PROSITE profilePS5129410.033285336IPR017930Myb domain
SMARTSM007173.9E-4287334IPR001005SANT/Myb domain
SuperFamilySSF466894.14E-9289345IPR009057Homeodomain-like
CDDcd001670.00134290319No hitNo description
PfamPF139213.2E-12291349No hitNo description
Gene3DG3DSA:1.10.10.604.5E-8305341IPR009057Homeodomain-like
PROSITE profilePS500907.306333402IPR017877Myb-like domain
SMARTSM007178.8337405IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-5342403IPR009057Homeodomain-like
SuperFamilySSF466893.68E-5382462IPR009057Homeodomain-like
PROSITE profilePS500907.445404457IPR017877Myb-like domain
SMARTSM0071763408459IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTEESDSQGN KLEKKKLHKK SKRPRDCETS NGGDDSVVTE ERQGKKMKLD KVFSKEDGRT  60
EDEDDDQGKE MKKNKKEKLI EESKSEEEYN QLRSNEGEDG DQGKRMKKKK KLSDKSKSKN  120
SEFNSNDGGS SLASVEEGDA KACGDVTEVD DQSKKKKTKK KAKAGTDEST IPAAHGETSK  180
PKRVTFSDQV EVYGDQVEVC GDQVEVCGDD DLVRGKRFTP EEDEKIKEAV SDYIESHGLG  240
DEGLKMILHC MSHPEVRGCW KEIGEALPHR PHQSVYYRAH IIYERDEARK WTPEELDFLL  300
KAQDQHGSDW KLIAEALNKH RLHVKDTWRR IRRTNANTGR WSQDEYQRLF DLVNKDLCAR  360
AAEDCRKNKH GMLRDNVSWE AISDEFGSRA SALCCMKWYQ QLTSPMVADG IWSDTDDYRL  420
VNALYALDAC SMEEVDWDNL LEHRSGDVCR KRWHQMVRNI REYAGKSFAE QVEILSKRYR  480
PDLVEAREAF DSKPVVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109QGKRMKKKK
2103109KRMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0117159.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.20.0RNA polymerase I termination factor
RefseqXP_006594063.10.0RNA polymerase I termination factor
RefseqXP_006594064.10.0RNA polymerase I termination factor
RefseqXP_028198132.10.0RNA polymerase I termination factor
RefseqXP_028198133.10.0RNA polymerase I termination factor
RefseqXP_028198134.10.0RNA polymerase I termination factor
RefseqXP_028198135.10.0RNA polymerase I termination factor
TrEMBLA0A0B2SVJ40.0A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ80.0I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-116MYB_related family protein