PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0115219.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 319aa    MW: 35153.1 Da    PI: 7.5994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0115219.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.8e-185499147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+q+G+++W++Ia+++  gRt+k+c++rw++ 
  Lj0g3v0115219.1 54 RGHWRAAEDAKLKELVAQFGPRNWNSIAEHLE-GRTGKSCRLRWFNQ 99
                     899*****************************.***********996 PP
2Myb_DNA-binding55.11.8e-17106150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T eE+e+l+ a+k++G++ W+ I+r ++ gRt++ +k++w+  
  Lj0g3v0115219.1 106 RSAFTVEEEERLLAAHKMYGTK-WAMISRLFP-GRTDNAVKNHWHVM 150
                      789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.23149100IPR017930Myb domain
SMARTSM007171.0E-1453102IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-2853147IPR009057Homeodomain-like
PfamPF002491.1E-165499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2655107IPR009057Homeodomain-like
CDDcd001671.51E-145798No hitNo description
PROSITE profilePS5129425.933101155IPR017930Myb domain
SMARTSM007173.0E-14105153IPR001005SANT/Myb domain
PfamPF002498.2E-14106149IPR001005SANT/Myb domain
CDDcd001679.79E-12108151No hitNo description
Gene3DG3DSA:1.10.10.601.5E-19108153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASSPHFNNA GYGSSMDMDF PPSDPVPIDQ GDDEVEANDS SAFGKNGPTK LCVRGHWRAA  60
EDAKLKELVA QFGPRNWNSI AEHLEGRTGK SCRLRWFNQL DPKINRSAFT VEEEERLLAA  120
HKMYGTKWAM ISRLFPGRTD NAVKNHWHVM MARRQREQQH RRRKPTFQNP DAKVLNLLLS  180
KNAAASESTI SSTIDESASA CTNLSLTPSS FRSIPRHFHN QNTFQAYGSL IGLYGESNVP  240
VGDVGCDKFF SAWNGSSDRG NVGKLMGVDQ SNCSVSNSEV SVSESVATNK TSTSIFGQNE  300
DVGNKINMPF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-33511541104C-Myb DNA-Binding Domain
1msf_C3e-33511541104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0115219.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457482.11e-125PREDICTED: transcription factor MYB76-like
RefseqXP_020218437.11e-125transcription factor MYB54
TrEMBLA0A151TA381e-124A0A151TA38_CAJCA; Transcription factor MYB44
STRINGGLYMA03G00980.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.16e-60myb domain protein 56