PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0114989.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 182aa    MW: 19933.3 Da    PI: 5.4552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0114989.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07153174223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  Lj0g3v0114989.1 153 FCEICGKGFRRDANLRMHMRAH 174
                      6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-6149175No hitNo description
SMARTSM003550.0017152174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-6152174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.03152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSNLDPDSQA TTTRKLHPHE DPNFTAADPH VPLRNLFLVR TTMDSLHHFL SQSINTNSPL  60
AADQITAVSN QIVSALHQTV VNGAALVSCS QNLTSAAGAS VLPPTISIPE KSVKQTLDSK  120
VEFAEDDTVE GRDGDWEIVE LDAVELLAEH IHFCEICGKG FRRDANLRMH MRAHGNQFKT  180
AE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.137760.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0114989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073106e-43AP007310.2 Lotus japonicus genomic DNA, chromosome 3, clone: LjT25F10, TM1459, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502416.17e-70protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_004502417.14e-71protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
TrEMBLA0A2Z6MY237e-72A0A2Z6MY23_TRISU; Uncharacterized protein
STRINGXP_004502416.13e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.38e-22C2H2 family protein