PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0112069.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 292aa    MW: 31655.1 Da    PI: 4.904
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0112069.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC dC ++ H        H++vpl
  Lj0g3v0112069.1  4 QCNVCEGAEAKVLCCADEAALCWDCDEKVHAAnklaskHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box28.72.7e-095495338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     ++kC+ ++e    +fC +++ llC++C l++H        H+
  Lj0g3v0112069.1 54 MPKCDICQEAFGYFFCLEDRALLCRKCDLSIHTAnayvsgHQ 95
                     799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
CDDcd000218.85E-9347No hitNo description
PfamPF006431.5E-5447IPR000315B-box-type zinc finger
SMARTSM003362.0E-11447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1865299IPR000315B-box-type zinc finger
SMARTSM003363.0E-155299IPR000315B-box-type zinc finger
PfamPF006433.4E-75495IPR000315B-box-type zinc finger
CDDcd000212.08E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKIQCNVCEG AEAKVLCCAD EAALCWDCDE KVHAANKLAS KHQRVPLSLS SSHMPKCDIC  60
QEAFGYFFCL EDRALLCRKC DLSIHTANAY VSGHQRFLLT GVRVGLEATE PGASSTSLKS  120
DSGEKNSDTK SSSVSRKVSA MLQSSDYNEV LPTEVGGFGE FPPAKASYGG GSTAGNISQW  180
SIDDFFGINE FSQNYNYMDG SSRADSCKLG DSDSPFLRSG EDEMEDDDCL GRVPDSSLSV  240
PQIPSPPTAS GLHWPKNPQY SSDSGLFVPD ISFSSMQRPQ SSSIFSRPHR HI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.31360.0cell culture| floral bud| flower| pod| root
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0112069.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983591e-132BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464521.11e-173B-box zinc finger protein 22
SwissprotQ9SYM23e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A072VAB51e-171A0A072VAB5_MEDTR; B-box type zinc finger protein
STRINGXP_004488990.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-89light-regulated zinc finger protein 1