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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0107919.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 9262.73 Da PI: 10.5586 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.2 | 3.3e-12 | 8 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v ++G ++W+ I+ g k+c++rw +yl Lj0g3v0107919.3 8 KGPWTEQEDFKLVSFVGMFGDRRWDFISMVSG-----KSCRLRWVNYL 50 79******************************.....*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.553 | 3 | 54 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 3 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-9 | 7 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-10 | 8 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.39E-17 | 9 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.27E-8 | 10 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 54 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.19 | 55 | 77 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MVQQEFRKGP WTEQEDFKLV SFVGMFGDRR WDFISMVSGK SCRLRWVNYL HPGLKRGKLT 60 PQEERMVLEL QSKWGNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-14 | 5 | 77 | 1 | 77 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-14 | 1 | 77 | 20 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1955 | 4e-61 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0107919.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149738 | 8e-59 | BT149738.1 Lotus japonicus clone JCVI-FLLj-4E5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597326.2 | 1e-43 | transcription factor MYB48 | ||||
Refseq | XP_017425754.1 | 1e-43 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q4JL84 | 3e-40 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A0L9UNC9 | 3e-42 | A0A0L9UNC9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SGK7 | 3e-42 | A0A0S3SGK7_PHAAN; Uncharacterized protein | ||||
TrEMBL | G7IHL4 | 3e-42 | G7IHL4_MEDTR; Myb transcription factor | ||||
STRING | GLYMA13G40830.4 | 1e-42 | (Glycine max) | ||||
STRING | GLYMA15G04620.1 | 9e-43 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-42 | myb domain protein 59 |
Publications ? help Back to Top | |||
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