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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0107919.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 48aa MW: 5570.36 Da PI: 4.8026 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 8 | 39 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT++Ed +lv v ++G ++W+ I+ g Lj0g3v0107919.2 8 KGPWTEQEDFKLVSFVGMFGDRRWDFISMVSG 39 79***********************9997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.58E-7 | 3 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.956 | 3 | 48 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 3 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-7 | 8 | 35 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-5 | 10 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 48 aa Download sequence Send to blast |
MVQQEFRKGP WTEQEDFKLV SFVGMFGDRR WDFISMVSGL KVAGDSNI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1955 | 2e-80 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0107919.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139912 | 2e-77 | BT139912.1 Lotus japonicus clone JCVI-FLLj-17E8 unknown mRNA. | |||
GenBank | BT149738 | 2e-77 | BT149738.1 Lotus japonicus clone JCVI-FLLj-4E5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189439.1 | 1e-22 | transcription factor MYB48-like | ||||
Refseq | XP_029128765.1 | 3e-22 | transcription factor MYB48 | ||||
Swissprot | Q4JL84 | 1e-16 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A3Q7X706 | 3e-21 | A0A3Q7X706_CICAR; transcription factor MYB48-like | ||||
STRING | AES67577 | 1e-21 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 6e-19 | myb domain protein 59 |
Publications ? help Back to Top | |||
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