PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0105629.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 296aa    MW: 32160.4 Da    PI: 6.1526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0105629.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000362002381255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Lj0g3v0105629.1 200 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 238
                      6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-10198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-6198242No hitNo description
Gene3DG3DSA:4.10.280.102.4E-7202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNRSVLQSSP VQQMMAGNPN NLWNFNTMHS PSQQPSPNFF SNSSNNFLTP HHAPPSSFPF  60
PPWHDNQELP ESWSQLLMSG LMSEEDKAGM CQMLISQASN TSLVDVKQES SANSYVFGHG  120
NEEFQAANPT WSQLGSGSSS SSKSSGTSFS SSVLDFSNNK TDARPLASDP SSECNSTGAG  180
GAFKKARVQP STTQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ  240
IEALSLPYLG SGSGNMRHQQ SVQGDQRNCI FPEDPGQLLN ENCLKRKAAG DQDSQE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.51961e-95floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0105629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938721e-133BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341129.11e-158transcription factor bHLH68-like isoform X2
SwissprotQ8S3D11e-63BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445KSI11e-153A0A445KSI1_GLYSO; Transcription factor bHLH68 isoform B
STRINGGLYMA05G35610.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]