PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0105629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 32160.4 Da PI: 6.1526 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00036 | 200 | 238 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Lj0g3v0105629.1 200 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 238 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.553 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-10 | 198 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-6 | 198 | 242 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-7 | 202 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MNRSVLQSSP VQQMMAGNPN NLWNFNTMHS PSQQPSPNFF SNSSNNFLTP HHAPPSSFPF 60 PPWHDNQELP ESWSQLLMSG LMSEEDKAGM CQMLISQASN TSLVDVKQES SANSYVFGHG 120 NEEFQAANPT WSQLGSGSSS SSKSSGTSFS SSVLDFSNNK TDARPLASDP SSECNSTGAG 180 GAFKKARVQP STTQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ 240 IEALSLPYLG SGSGNMRHQQ SVQGDQRNCI FPEDPGQLLN ENCLKRKAAG DQDSQE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5196 | 1e-95 | floral bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0105629.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093872 | 1e-133 | BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341129.1 | 1e-158 | transcription factor bHLH68-like isoform X2 | ||||
Swissprot | Q8S3D1 | 1e-63 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A445KSI1 | 1e-153 | A0A445KSI1_GLYSO; Transcription factor bHLH68 isoform B | ||||
STRING | GLYMA05G35610.1 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-58 | bHLH family protein |
Publications ? help Back to Top | |||
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