PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0104249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17773.6 Da PI: 4.356 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 7 | 30 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 + W++Ia +++ gRt++++k++w+ + Lj0g3v0104249.1 7 R-WSLIAGRLP-GRTANDVKNYWNCH 30 4.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.835 | 1 | 35 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.69E-8 | 6 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-12 | 6 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-6 | 7 | 28 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.13E-7 | 7 | 31 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MLQLFSRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNAQEA EDHRELTKDV QVIRPQPRNI 60 GSSSMKRMSQ SESPTDQGVQ QENIGVTFDA GGQSHNPESQ QESMYPGLNQ QGMVGCEFPM 120 DFQLEGFETM ASGEGSSSQW NWDDLFLDMD LYNEFSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0104249.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 8e-39 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442371.1 | 5e-71 | transcription factor MYB1 | ||||
TrEMBL | A0A072TGV7 | 1e-69 | A0A072TGV7_MEDTR; Myb transcription factor | ||||
STRING | GLYMA18G41520.1 | 8e-63 | (Glycine max) | ||||
STRING | XP_007140451.1 | 8e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-14 | myb domain protein 113 |