PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0099719.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26924.5 Da PI: 9.4785 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 79 | 126 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er RR+++++ f +L llP + p K +K++i e++v+YIk Lq Lj0g3v0099719.1 79 VHIMIERERRKKMRNMFGTLHALLPRL---P-SKADKSAIIEETVDYIKTLQ 126 599***********************6...3.8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.745 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.44E-13 | 78 | 130 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-16 | 78 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-15 | 78 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-11 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-11 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDLEGQGLNL GFFWENQPWG TLSNSDNIGE SKEKLDMKPQ NKKGEGNGED TLVYKKRRRG 60 NRTEKNVVAD GEGKVDHEVH IMIERERRKK MRNMFGTLHA LLPRLPSKAD KSAIIEETVD 120 YIKTLQQTLQ KLEKHKKERF QSSVEQPYDL REGFIPDLGS STSLSSIMVG SRTSSNTPIS 180 YNSNSLQPVG FETWSYQNIV LNVTGFEAQF CISTAKKKST LTTIAFVLEK YKIEVIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0099719.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348315.1 | 1e-66 | transcription factor bHLH95 | ||||
TrEMBL | A0A394DCB4 | 1e-63 | A0A394DCB4_LUPAN; Uncharacterized protein | ||||
STRING | AES90131 | 4e-64 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 8e-39 | bHLH family protein |