PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0096969.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 314aa    MW: 34793.7 Da    PI: 4.354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0096969.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.57.6e-471813143139
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL+ecA a+s+g+ e+a+++++ l++++s +g+p +R+aay++e+Laarla+s++++ykal+++e +   s+++laa+++++ev+P++kf+++
  Lj0g3v0096969.2 181 QLLYECAIALSEGNEEEASSMINDLRKMVSIQGEPSKRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SADRLAAMQILFEVCPCFKFGFI 271
                      89*****************************************************************9...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139
                      +aN+aI eav+ +  +HiiDfdi+qG Q+++L+q+LasR+++p
  Lj0g3v0096969.2 272 AANNAITEAVKDDMNIHIIDFDINQGSQYISLIQTLASRSNKP 314
                      ***************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.397153314IPR005202Transcription factor GRAS
PfamPF035142.6E-44181314IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSLVRSSELT PTSCKNAKLY SLKGTDINHR SMYTTDTYSS ESYEKHFHDS QTEQIEPSCC  60
SMSSSSIHTD GASSCQIRAS SDLLENGSLD SPDDDSLMKL KLQALERALL VDSDAEAEEE  120
EDDVFETVQS MEIDHDISEW ADPIQNMKLH DSPKEYSSSY SNITSISSTK DISQISRTPN  180
QLLYECAIAL SEGNEEEASS MINDLRKMVS IQGEPSKRIA AYMVEGLAAR LAESGKSIYK  240
ALRCKEPPSA DRLAAMQILF EVCPCFKFGF IAANNAITEA VKDDMNIHII DFDINQGSQY  300
ISLIQTLASR SNKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1918531425157Protein SCARECROW
5b3h_A1e-1918531424156Protein SCARECROW
5b3h_D1e-1918531424156Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0096969.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212491.11e-154scarecrow-like protein 1
SwissprotQ9SDQ33e-82SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A151TS871e-153A0A151TS87_CAJCA; Scarecrow-like protein 1
STRINGGLYMA06G12701.11e-150(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-77SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]