PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0096959.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 576aa    MW: 64448.7 Da    PI: 4.7558
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0096959.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.43.2e-1352085763374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL+ecA a+s+g+ e+a+++++ l++++s +g+p +R+aay++e+Laarla+s++++ykal+++e +   s+++laa+++++ev+P++kf+++
  Lj0g3v0096959.1 208 QLLYECAIALSEGNEEEASSMINDLRKMVSIQGEPSKRIAAYMVEGLAARLAESGKSIYKALRCKEPP---SADRLAAMQILFEVCPCFKFGFI 298
                      89*****************************************************************9...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN+aI eav+ +  +HiiDfdi+qG Q+++L+q+LasR+++p ++R Tgv++pes+  s   l  +g rL+k+Ae+lg+pfef++ v++r++ 
  Lj0g3v0096959.1 299 AANNAITEAVKDDMNIHIIDFDINQGSQYISLIQTLASRSNKPSRVRWTGVDDPESVqrSVGGLTIIGLRLEKLAEALGLPFEFRA-VVSRTSI 391
                      *******************************************************99889999***********************.79***** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      +++++L+++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl+rf+ea +yysa+f+sl+ +lpres++r
  Lj0g3v0096959.1 392 VTPSMLSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYKYYSAVFESLDITLPRESQDR 485
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++vEr++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF+p p+s ++ ++++ l++ + ++ y+++ee g+l +gW+d++L+++SaWr
  Lj0g3v0096959.1 486 MNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDR-YKIKEEMGALHFGWEDKNLIVASAWR 576
                      **************************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.722180557IPR005202Transcription factor GRAS
PfamPF035141.1E-132208576IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSLVRSSELT PTSCKNAKLY SLKGTDINHR SMYTTDTYSS ESYEKHFHDS QTEQIEPSCC  60
SMSSSSIHTD GASSCQIRAS SGMVANNPFD ASLIPMRHHD AYQSTFGSDL LENGSLDSPD  120
DDSLMKLKLQ ALERALLVDS DAEAEEEEDD VFETVQSMEI DHDISEWADP IQNMKLHDSP  180
KEYSSSYSNI TSISSTKDIS QISRTPNQLL YECAIALSEG NEEEASSMIN DLRKMVSIQG  240
EPSKRIAAYM VEGLAARLAE SGKSIYKALR CKEPPSADRL AAMQILFEVC PCFKFGFIAA  300
NNAITEAVKD DMNIHIIDFD INQGSQYISL IQTLASRSNK PSRVRWTGVD DPESVQRSVG  360
GLTIIGLRLE KLAEALGLPF EFRAVVSRTS IVTPSMLSCR PGEALVVNFA FQLHHMPDES  420
VSTVNERDQL LRLVKSLNPK LVTVVEQDVN TNTAPFLQRF VEAYKYYSAV FESLDITLPR  480
ESQDRMNVER QCLARDIVNV VACEGEDRIE RYEVAGKWRA RMTMAGFTPS PMSANVGDEI  540
RKLIKLYCDR YKIKEEMGAL HFGWEDKNLI VASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6321257525378Protein SCARECROW
5b3h_A1e-6321257524377Protein SCARECROW
5b3h_D1e-6321257524377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0096959.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212491.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A151TS870.0A0A151TS87_CAJCA; Scarecrow-like protein 1
STRINGGLYMA06G12701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]