PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0096699.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 214aa    MW: 24034.2 Da    PI: 7.6362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0096699.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-0958105455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L   +++++sLq
  Lj0g3v0096699.1  58 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDNIINHVQSLQ 105
                      8*************************9....788999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-1452122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-852109No hitNo description
PROSITE profilePS5088814.14554104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1455116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-658105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-760110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNPKCVKRKE REKKVKVSSK KSKSAIAADD RCGGDGDGDG EKLPYVHVRV RRGQATDSHS  60
LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDNIINH VQSLQHEVEI LSMKLASANP  120
IIDFNLDSIL ATEGVSLTDS NFPATVAPIA WPEIPLNENR QHYQQSWQFD AFHQPLWGRE  180
EYNPNFMTPE NSLLSYDSSV NSVSLHSNQL KMEL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0096699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213382.11e-115transcription factor bHLH48 isoform X1
SwissprotQ8VZ021e-65BH048_ARATH; Transcription factor bHLH48
TrEMBLI1L9V51e-113I1L9V5_SOYBN; Uncharacterized protein
STRINGGLYMA10G12210.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-70bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]