PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 236aa MW: 26075.9 Da PI: 6.6479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0094349.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lj0g3v0094349.1 79 FSCNYCRRKFFSSQALGGHQNAH 101 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.59E-6	77	107	No hit	No description
PROSITE profile	PS50157	11.302	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MMTPNLKLEA ENNLEGRSQV GSNNSATTSD ADPGSVSLDL TLNFSPSDEI EELKDTNDTN 60 SEAGAEDHAS SLPSIHRIFS CNYCRRKFFS SQALGGHQNA HKRERTMAKR AMRMGMFTER 120 YTSLASLPLH GSNFRSLGIE AHSAMHQRHM ASSSLRVPDM RGAARFEKDY CFGTPMFMQD 180 GDVGLFWPGS FRQIDARAGV NLGHEHEQHA HNSSPSFVET TPPAQTSTSP DLTLRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.8150	1e-127	pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0094349.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027360281.1	1e-114	zinc finger protein 4-like
Refseq	XP_027360282.1	1e-114	zinc finger protein 4-like
Refseq	XP_027360283.1	1e-114	zinc finger protein 4-like
Refseq	XP_027360284.1	1e-114	zinc finger protein 4-like
Refseq	XP_027360285.1	1e-114	zinc finger protein 4-like
Swissprot	Q39263	3e-37	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0B2RG97	1e-106	A0A0B2RG97_GLYSO; Zinc finger protein 4
TrEMBL	A0A0R0E563	1e-106	A0A0R0E563_SOYBN; Uncharacterized protein
TrEMBL	A0A445EZD7	1e-106	A0A445EZD7_GLYSO; Zinc finger protein 4
STRING	GLYMA07G27820.1	1e-106	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-39	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]