PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0091669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 158aa MW: 17373.7 Da PI: 7.2138 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 2 | 35 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v+++k+lG++ W++Ia ++ gRt++++k++w+ + Lj0g3v0091669.1 2 IVKLHKLLGNR-WSLIAGRLA-GRTANDVKNYWNCH 35 79*********.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 1 | 36 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0024 | 1 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.128 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 8.05E-9 | 1 | 36 | No hit | No description |
SuperFamily | SSF46689 | 6.71E-10 | 2 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MIVKLHKLLG NRWSLIAGRL AGRTANDVKN YWNCHLSKKL NAQVVDQEKH MVTNIDVIKP 60 QPAGNVIIGT SSISSKRSQL GELSPSPPPA APHHQSTGII FSPTFDGGHG QSQMLELEED 120 HNMCSYLDQQ GLVGMLPMEL QFDEVKAMSN GQNSSSQW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0091669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136043 | 0.0 | BT136043.1 Lotus japonicus clone JCVI-FLLj-18L10 unknown mRNA. | |||
GenBank | BT138580 | 0.0 | BT138580.1 Lotus japonicus clone JCVI-FLLj-7C5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602623.1 | 2e-45 | transcription factor MYB90 | ||||
Refseq | XP_028213768.1 | 2e-45 | transcription factor MYB90-like | ||||
TrEMBL | I3SDN3 | 1e-112 | I3SDN3_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA18G41520.1 | 8e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-21 | myb domain protein 113 |