PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0084249.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 476aa    MW: 52775.4 Da    PI: 7.3555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0084249.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17327373455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Lj0g3v0084249.1 327 VHNLSERRRRDRINEKMRALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 373
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-19320381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-20321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.368323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-18326377No hitNo description
PfamPF000101.1E-14327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-18329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNNSAPDWNF GSDTCLTNQK KPIGMDNDLV EILWQNGQLV LQSQAHKKSV VNSIASRQVN  60
KKFQPTLRTS DPFGMIQDDE TISWIQYPPD HSLEQELCSE LLSELPLCEV ESYRQIRQFG  120
DAKFSKLDDS SMKPSCVQEF SGIPMPAPKF HASDSYQKNK VQNFPHFSAL PIVSTASANA  180
HLRDKIAGNN VSKGEIRECS VMTVGSSHCG SNHIPQDPDI SRASSNGAWT TTLSAEPEAG  240
RDDVHRTIPQ CEKGKPEMLE PTMTSSSGGS GGSSLGKTCS LSTRSQGEKR KGIDVEEQSE  300
DTELKSAVGN KASRRAASAR RNRAAEVHNL SERRRRDRIN EKMRALQQLI PHSSKTDKAS  360
MLEEAIEYLK SLQLQLQVMW MGTGMTPMMF PGIQHYMSQM GMGMATPPFP PIHNPMQLPR  420
GPLDQSIAAS QTPNQSLMSP NPILGAFNYQ NQMQNPAISE QYARYMGYHL MQNASQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0084249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352431e-92AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341462.10.0transcription factor PIF4-like isoform X3
TrEMBLA0A0B2R3330.0A0A0B2R333_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform C
STRINGGLYMA18G14530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.28e-29phytochrome interacting factor 4