PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0075609.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 430aa    MW: 47124.8 Da    PI: 9.1604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0075609.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037196218223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C++Cg+ Fs ++  + H  + H
  Lj0g3v0075609.1 196 TCHKCGEQFSKWEAAEAHHLSkH 218
                      7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280197218IPR007087Zinc finger, C2H2
SuperFamilySSF563991.04E-21220429No hitNo description
Gene3DG3DSA:3.90.228.108.6E-8227406IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPTVWFSLKR SLHCKSEPTD VHVPKSRKHL ATILTKRAGT GRSGCSRSIA NLKDVIHGSK  60
RHLEKPPSCS PRSIGSSEFL NPITHEVILS NSRCELKITG YGGFQEGGVA SDGNNNGGET  120
GDSTFVGTLR PGTPGPGGHP TMHYFNPSYK TPATPPRKLS PFLSSDKEGS GFHGAGFHSS  180
HRLSLETDSN GPCNVTCHKC GEQFSKWEAA EAHHLSKHAV TELVEGDSSR KIVEIICRTS  240
WLKSENHCGR IERVLKVHNM QKTLARFEEY REMVKIKASK LQKKHPRCLA DGNELLRFYG  300
TTLACSLGLN GSSSLCQYER CCVCRIIRNG FSSNKEELKG GIGVFTTSTS GRAFESIEIL  360
GHDPSLRKAL IVCRVIAGRV HRPLENIQEM AGQTGFDSLA GKVGLYSNIE ELYLLNPRAL  420
LPCFVVVCKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.111930.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0075609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355460.10.0uncharacterized protein LOC113865239
TrEMBLA0A151SFE50.0A0A151SFE5_CAJCA; Uncharacterized protein
STRINGGLYMA06G41530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49831013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-170C2H2 family protein