PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0069559.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 183aa    MW: 20678.8 Da    PI: 7.7312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0069559.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-121461355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + h  +Er+RR++i + f  L  l+P +     kK +Ka++L  ++++Ik+Lq
  Lj0g3v0069559.1 14 QDHIVAERKRREKISQQFIALSALIPGL-----KKIDKASVLGDTIQHIKQLQ 61
                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.971160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-101461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-171577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-161577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-101665No hitNo description
SMARTSM003532.2E-131766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRNSSSARSP HQAQDHIVAE RKRREKISQQ FIALSALIPG LKKIDKASVL GDTIQHIKQL  60
QEQVKLLEEQ SKRINAESVV YVDKSKSEDV SDTSSNNVSL PEIEARVLEN KVLIRIHCEK  120
QEGVLMNILR EIDNLDLTVI NSSTLHFGAS KLDITIIAEM DDEFKLSVKE LARKLRVGLL  180
QLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924ERKRRE
22025RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0069559.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102772e-67AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217421.11e-85transcription factor bHLH18
SwissprotQ9T0721e-49BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A151TJ508e-85A0A151TJ50_CAJCA; Transcription factor bHLH25
STRINGGLYMA01G40611.18e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-43bHLH family protein