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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0064839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 538aa MW: 60113.8 Da PI: 5.5075 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.4 | 9.2e-07 | 247 | 267 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg Lj0g3v0064839.1 247 PCPEFKK-GPCIKGDSCEYAHG 267 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 4.7E-17 | 19 | 165 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.75E-14 | 37 | 146 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.6E-8 | 62 | 135 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.4 | 66 | 96 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 13.39 | 66 | 161 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.20E-12 | 68 | 144 | No hit | No description |
SMART | SM00248 | 0.0017 | 101 | 133 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.033 | 101 | 136 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.9E-4 | 242 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.62 | 247 | 269 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 247 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.301 | 277 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 277 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MNKPCQTCLI MEDEHVLHQK KSALLEFAAT DDVVAFKDAV EKDGHDVDEV GLWYGRRVGS 60 KKFGYEERTP LMIAAMFGCK GVLSYILETC HVDVNKACGS DCATALHCAV VGGFAKSPEI 120 VKLLLDASAD VNAVDSNVKR PYDLTFSLSN SRNRVLQAML EGANCIDEGL EEVKKEQTRV 180 SKDYPADPSF PDIRNGIYGT DEFRMFTFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK 240 YHYSCVPCPE FKKGPCIKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCT RNVCFFAHKK 300 EELRPLYAST GSALPCSMDS FSTPSLTPSG SPSHAGGTVW KSQNAIPTLQ LSRNRLKSAL 360 NARDSDLDIE LLKLENLRLM QQLMLEDMVG LSSSPSKWEN SMPNSPVFGS YMQSSTEIQV 420 HQNVNQKLQG YSSNFSPSKV IGSSPFRVFN SELPSPITPL DVDPFTFSDW GSPDGKLDWT 480 IRVDENYDEP DVSWVNSLLK DATPMESGQY SVEEKVQYCQ NGTDAVSAVY MKQEQMVV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0064839.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019447011.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q93ZS9 | 1e-151 | C3H47_ARATH; Zinc finger CCCH domain-containing protein 47 | ||||
TrEMBL | A0A1J7HSX2 | 0.0 | A0A1J7HSX2_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA11G27130.1 | 0.0 | (Glycine max) | ||||
STRING | GLYMA14G37330.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23976 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55980.1 | 1e-149 | salt-inducible zinc finger 1 |
Publications ? help Back to Top | |||
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