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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0063509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23807.8 Da PI: 10.8327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46 | 9.7e-15 | 40 | 84 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n+ Er+RRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Lj0g3v0063509.1 40 NQSERKRRDRINQRLKALQKLVPNA-----SKTDKASMLDEVINYLKQLQ 84 789*********************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.412 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-12 | 40 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-17 | 40 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 40 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.75E-14 | 40 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRSIRLVTLD RMSLNKMTET AKQKHAKPTQ KGEIELLPLN QSERKRRDRI NQRLKALQKL 60 VPNASKTDKA SMLDEVINYL KQLQAQIQIM NMTNLPQMMV PLAMQQQLQM SMQLARIGAM 120 GMVNMNHLVR PTSIMMPASL VQPRAPASSN PEPSSSGINA SIPLPNPYCA NLTQLVNMEI 180 LNNMSGLYRQ QMSQKTQNNQ SLEQQLDTNA P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | ERKRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0063509.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027333876.1 | 4e-58 | transcription factor UNE10-like isoform X1 | ||||
Refseq | XP_027333885.1 | 4e-58 | transcription factor UNE10-like isoform X2 | ||||
TrEMBL | A0A371E8Y6 | 2e-57 | A0A371E8Y6_MUCPR; Transcription factor PIF7 (Fragment) | ||||
STRING | EOY21971 | 6e-50 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 6e-25 | bHLH family protein |