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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0058889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 326aa MW: 35932.2 Da PI: 8.0283 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.5e-32 | 97 | 152 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAa +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve Lj0g3v0058889.1 97 AIRYRECLKNHAAGMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEG 152 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-25 | 98 | 153 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-28 | 98 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.3E-31 | 99 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.102 | 100 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-30 | 245 | 315 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.14E-19 | 245 | 314 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-27 | 253 | 309 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEVSSSQEAG EIPIPIPIPI PINSSTNYGG GHAAGNGHDH HMNMHHIHDP APHHNHNHNN 60 IISPTSAAVP SNGSSMQLQA AAGLQQEDDG AYNKKVAIRY RECLKNHAAG MGGNATDGCG 120 EFMPSGEEGT IEALNCSACN CHRNFHRKEV EGEPPDYQHF NRLGLGGRKF ILGGHHHHHH 180 KNILTTPEAL GYHHHPTTAG NNNILPSRTI LPPHHMIMPY NIGSLLPSES DEQEDVAAGG 240 MVGRPAGQNQ IVKKRFRTKF TQEQKEKMLN FADKVGWKIQ KQEESAVQQF CQEIGVKRRV 300 LKVWMHNNKH NLAKKNNLPT TPSQPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-24 | 254 | 311 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0058889.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028762854.1 | 1e-116 | zinc-finger homeodomain protein 3-like | ||||
Refseq | XP_028762855.1 | 1e-116 | zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A151SB96 | 1e-113 | A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | GLYMA07G40190.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-65 | homeobox protein 31 |