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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lj0g3v0057709.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
SBP |
| Protein Properties |
Length: 269aa MW: 29592.8 Da PI: 8.5541 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj0g3v0057709.3 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130.9 | 4.4e-41 | 170 | 246 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cqv+gC dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+
Lj0g3v0057709.3 170 CCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPY 246
6**************************************************************************86 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048653 | Biological Process | anther development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MEWNSKSPSQ WDLEYLSFFN PKATENPKLQ PVNTSAEENQ EINAGMLDTS GGSGCSGSEL 60
IHASSSRSSK SNSISSSSNR DSKTSTFTFE SSSGKKELSK EEPVETSQAP EPSSVSGEPL 120
LTLKLGKRLY FEDGYPGSDS KNLSFSGAPI SSLNTGKKCK SNGQDIHYPC CQVDGCGLDL 180
SSAKDYHRKH RVCESHSKSP KVVIAGLERR FCQQCSRFHG LLEFDEKKRS CRRRLSDHNA 240
RRRKPYPQAV QLSQSALSSP HCGITLQTQ
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 226 | 243 | KKRSCRRRLSDHNARRRK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
