PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0056309.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 285aa MW: 30516.5 Da PI: 6.4052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0056309.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	134	178	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L Lj0g3v0056309.1 134 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 178 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-15	127	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-14	131	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-7	134	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MANHPSDAPA ADDFLEQILG LPNFASADGT DASSLHAPMM LQLNSGDLAA GGAGFHSPVY 60 QLGLSLDQGK GGGFLKPDDA SGSGNRFRED VVVGARHKNA FHGQPMPTTV PSAPHPPPMR 120 PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN KTDRAVMLDE IVDYVKFLRL 180 QVKVLSMSRL GGAGAVAPLV TDIPLSSVEE EGGEGGRNQP AWEKWSNDGT EKQVAKLMEE 240 NIGAAMQFLQ SKALCIMPIS LASAIYQSQP SENSSIVKPE TSPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	143	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.6234	0.0	cell culture\| floral bud\| pod\| protoplast\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0056309.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009763	1e-165	AP009763.1 Lotus japonicus genomic DNA, clone: LjT09J11, TM1923, complete sequence.
GenBank	FJ379747	1e-165	FJ379747.1 Lotus japonicus putative basic helix-loop-helix protein BHLH4 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495148.1	1e-172	transcription factor UNE12-like
Swissprot	O22768	1e-124	UNE12_ARATH; Transcription factor UNE12
TrEMBL	C0JP12	0.0	C0JP12_LOTJA; Putative basic helix-loop-helix protein BHLH4
STRING	XP_004495148.1	1e-171	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5449	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-100	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]