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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj0g3v0054379.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
LSD |
Protein Properties |
Length: 181aa MW: 19500.3 Da PI: 8.0421 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj0g3v0054379.3 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 38.1 | 2.6e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr++L YPrGA +V+Ca C+ +
Lj0g3v0054379.3 7 CNGCRNILVYPRGAGNVCCAWCNVI 31
**********************986 PP
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2 | zf-LSD1 | 44.8 | 2e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y GA+sVRC++C+t+
Lj0g3v0054379.3 46 CGGCRTLLMYANGATSVRCSCCNTI 70
***********************97 PP
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3 | zf-LSD1 | 38.8 | 1.5e-12 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Crt L+YP GA sV+Ca+C+
Lj0g3v0054379.3 84 CGNCRTALMYPHGALSVKCAICHY 107
**********************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000303 | Biological Process | response to superoxide |
GO:0001666 | Biological Process | response to hypoxia |
GO:0002240 | Biological Process | response to molecule of oomycetes origin |
GO:0009626 | Biological Process | plant-type hypersensitive response |
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
GO:0010618 | Biological Process | aerenchyma formation |
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MRCQLVCNGC RNILVYPRGA GNVCCAWCNV ITPVPPAGME MSQLYCGGCR TLLMYANGAT 60 SVRCSCCNTI TRVPESNQVS HIHCGNCRTA LMYPHGALSV KCAICHYITN MTNARFPILV 120 QRSNGTTESE TTTSESEIAS SISSSRPHFE SQTVVVENPM SVDSNGKLVS NVVVGVATNQ 180 R
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |